Interfacing with AWS S3

Using S3 may incur data transfer charges as well as multi-part upload request charges.

Sage is capable of natively reading & writing files located on AWS S3 (or S3-compatible systems, such as minio).

S3 paths should be specified as s3://bucket/prefix/key.mzML.gz or s3://bucket/prefix for output folder. This can be used for any path passed to Sage (configuration file, FASTA location, etc)
See AWS docs (opens in a new tab) for configuring your credentials